Publications
The vertebrate segmentation clock drives segmentation by stabilizing Dusp phosphatases in zebrafish
Simsek MF, Saparov D, Keseroglu K, Zinani O, Chandel AS, Dulal B, Sharma BK, Zimik S, Özbudak EM, Developmental Cell (2025).
Spatiotemporal control of pattern formation during somitogenesis
McDaniel C, Simsek MF, Chandel AS, Özbudak EM, Science Advances (2024).
A design logic for sequential segmentation across organisms
Simsek MF and Özbudak EM, FEBS Journal (2023).
Human stem cell models unravel mechanisms of somite segmentation
Simsek MF and Özbudak EM, Cell Stem Cell (2023).
Periodic inhibition of Erk activity drives sequential somite segmentation
Simsek MF, Chandel AS, Saparov D, Zinani OQH, Clason N, Özbudak EM, Nature, 2023.
Patterning principles of morphogen gradients
Simsek MF and Özbudak EM, Open Biology (2022).
A 3-D tail explant culture to study vertebrate segmentation in zebrafish
Simsek MF and Özbudak EM, J Vis Exp (2021).
Regulatory network of the scoliosis-associated genes establishes rostrocaudal patterning of somites in zebrafish
Keskin S, Simsek MF, Vu HT, Yang C, Devoto SH, Ay A, Özbudak EM, iScience (2019).
Spatial fold change of Fgf signaling encodes positional information for segmental determination in zebrafish
Simsek MF and Özbudak EM, Cell Reports (2018).
Quantifying spatial and temporal variations of the cell membrane ultra-structure by bimFCS
Weixiang J, Simsek MF, Pralle A, Methods (2018).
Effect of receptor dimerization on membrane lipid raft structure continuously quantified on single cells by camera based fluorescence correlation spectroscopy
Huang H, Simsek MF, Weixiang J, Pralle A, PLoS One (2015).